Media 000056973: Skeleton
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
YPM:VZ:YPM HERR 013348.001 Ophiodes striatus
Managed by
Nelson Rios

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Related Media (2)

Media produced from the same original imaging that created Media 000056973 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (2)

Derived media that were created from processing Media 000056973 (this media). The media immediately below this media in the imaging and processing workflow.

Mesh
· Restricted Download
Mesh
· Restricted Download

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GENERAL DETAILS Field Definitions

Media ID
000056973
Media type
Volumetric Image Series
Object element or part
skeleton
Object represented
YPM:VZ:YPM HERR 013348.001
Object taxonomy
Ophiodes striatus
Object organization
Vertebrate Zoology Division - Herpetology, Yale Peabody Museum
Side
--
Orientation
--
Short description
zipped 16 bit tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped 16 bit tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives
Creator
--
Date created
--
Date uploaded
August 28, 2018

FILE OBJECT DETAILS Field Definitions

File name
YPM-Herr-13348_Ophiodes_striatus_Rec.zip
File format(s)
ZIP archive, TIFF
File size
2.94 GB
Image width
2128
Image height
224
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.035884
Y pixel spacing
0.035884
Z pixel spacing
0.035884
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,211

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Museum of Comparative Zoology Scanning Facility (Harvard University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Nelson Rios
Data uploaded by
Matt Gage
Publication status
Restricted Download
Download reviewer
Greg Watkins-Colwell
IP holder
Yale University
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701769; NSF DBI-1702263; overt TCN; NSF DBI-1701714
Publisher
--
Cite as
originally appearing in , the collection of which was funded by
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M56973
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object YPM:VZ:YPM HERR 013348.001 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Museum of Comparative Zoology Scanning Facility (Harvard University)
Creator
Matt Gage
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
1.085
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
5
Projections
1200
Voltage
150
Power
0.0075
Amperage
50
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000056973: Skeleton [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matt Gage
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000056973: Skeleton [CTImageSeries] [Etc] (this media)