Media 000085290: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Mamm:MVZ:Mamm:223935 Brachytarsomys albicauda
Managed by
Carol Spencer

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Related Media (0)

Media produced from the same original imaging that created Media 000085290 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000085290
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
MVZ:Mamm:MVZ:Mamm:223935
Object taxonomy
Brachytarsomys albicauda
Object organization
Museum of Vertebrate Zoology (MVZ) Mammal Collection (Arctos)
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives
Creator
--
Date created
--
Date uploaded
August 28, 2019

FILE OBJECT DETAILS Field Definitions

File name
MVZ-mammals-223935_Brachytarsomys-albicauda.zip
File format(s)
ZIP archive, TIFF
File size
4.63 GB
Image width
1033
Image height
1435
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.074733
Y pixel spacing
0.074733
Z pixel spacing
0.074733
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,000

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Shion Otsuka
Publication status
Restricted Download
Download reviewer
Carla Cicero; Chris Conroy; Museum of Vertebrate Zoology; Carol Spencer
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701713; NSF DBI-1701714; oVert TCN; NSF DBI-1701797
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Museum of Vertebrate Zoology at Berkeley provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M85290
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Mamm:MVZ:Mamm:223935 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)
Creator
Ramon Nagesan, Gregory Pandelis, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
250
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1601
Voltage
85
Power
0.017
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000085290: Whole Body [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Ramon Nagesan, Gregory Pandelis, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000085290: Whole Body [CTImageSeries] [Etc] (this media)