Media 000086172: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
CM:Birds:A1006 Bombycilla garrulus
Managed by
Serina Brady

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Media Display

Related Media (1)

Media produced from the same original imaging that created Media 000086172 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (1)

Derived media that were created from processing Media 000086172 (this media). The media immediately below this media in the imaging and processing workflow.

Mesh
· Restricted Download

In Collections

Team
· Public

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GENERAL DETAILS Field Definitions

Media ID
000086172
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
CM:Birds:A1006
Object taxonomy
Bombycilla garrulus
Object organization
CM Birds Collection
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives
Creator
--
Date created
--
Date uploaded
September 10, 2019

FILE OBJECT DETAILS Field Definitions

File name
CM-birds-A1006_Bombycilla-garrulus_.zip
File format(s)
ZIP archive, TIFF
File size
3.45 GB
Image width
831
Image height
1273
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.061925
Y pixel spacing
0.061925
Z pixel spacing
0.061925
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,000

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Serina Brady
Data uploaded by
Shion Otsuka
Publication status
Restricted Download
Download reviewer
Serina Brady
IP holder
Carnegie Museum of Natural History, Section of Birds
Copyright statement
--
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Prohibited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN; NSF DBI-1701713; NSF DBI-1701714
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Carnegie Museum of Natural History provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M86172
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object CM:Birds:A1006 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)
Creator
Ramon Nagesan
Event date
April 07, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
250
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1601
Voltage
85
Power
0.017
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000086172: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Ramon Nagesan
Event date
April 07, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000086172: Whole Body [CTImageSeries] [CT] (this media)