Media 000098507: Head
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
CAS:SUR:26937 Dibamus novaeguineae
Managed by
Lauren Scheinberg

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Media produced from the same original imaging that created Media 000098507 (this media). Includes all media associated with this media through an imaging and processing workflow.

No related media found.

In Collections

Team
· Public
Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000098507
Media type
Volumetric Image Series
Object element or part
head
Object represented
CAS:SUR:26937
Object taxonomy
Dibamus novaeguineae
Object organization
CAS Herpetology (HERP)
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive \\r\\n\\r\\nMaisano:\\r\\nDibamus: Scans of the head of Dibamus novaeguineae (CAS-SU 26937) for Dr. Jessie Maisano of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 13 July 2005.\\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, no offset, empty container wedge, slice thickness 2 lines (= 0.0152 mm), S.O.D. 22.2 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.0152 mm), field of reconstruction 6 mm (maximum field of view 7.267909 mm), reconstruction offset 7700, scanner scale 3800, reconstruction scale 1200. Acquired with 15 slices per rotation. Ring removal processing done by Alison Mote based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul,” with parameter “binwidth=21.” Reconstructed with field of reconstruction of 6.5 mm and angle of 3.5 degrees. Total slices = 600.\\r\\n
Creator
--
Date created
--
Date uploaded
January 09, 2020

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
601 MB
Image width
737
Image height
810
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.005900
Y pixel spacing
0.005900
Z pixel spacing
0.015200
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
600

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Lauren Scheinberg
Data uploaded by
Barbara Sulbaran
Publication status
Open Download
Download reviewer
Jessie Maisano; Lauren Scheinberg
IP holder
California Academy of Sciences
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC-SA Attribution-NonCommercial-ShareAlike 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
EF-0334961, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: oUTCT provided access to these dataoriginally appearing in Gauthier et al., 2012, with data collection funded by NSF EF-0334961 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M98507
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object CAS:SUR:26937 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
1600
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000098507: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000098507: Head [CTImageSeries] [Etc] (this media)