Media 000098642: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
USNM:HERP:USNM 205722 Leiolepis rubritaeniata
Managed by
Collection Manager

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Media produced from the same original imaging that created Media 000098642 (this media). Includes all media associated with this media through an imaging and processing workflow.

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In Collections

Project
· Public

TAGS

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GENERAL DETAILS Field Definitions

Media ID
000098642
Media type
Volumetric Image Series
Object element or part
head
Object represented
USNM:HERP:USNM 205722
Object taxonomy
Leiolepis rubritaeniata
Object organization
NMNH - Division of Amphibians and Reptiles
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1216\\r\\n\\r\\nMaisano:\\r\\nLeiolepis: Scans of the head of Leiolepis belliana (USNM 205722) for Dr. Jessie Maisano of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 14 April 2005.\\r\\n\\r\\n16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.0683 mm), S.O.D. 98 mm, 1200 views, 2 samples per view, inter-slice spacing 2 lines (= 0.0683 mm), field of reconstruction 29 mm (maximum field of view 32.08356 mm), reconstruction offset 5000, scanner scale 570000, reconstruction scale 1900. Acquired with 15 slices per rotation. Ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with default parameters. Reconstructed with reconstruction angle of 8 degrees. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Total slices = 600.\\r\\n
Creator
--
Date created
--
Date uploaded
January 13, 2020

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
769 MB
Image width
858
Image height
968
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.028300
Y pixel spacing
0.028300
Z pixel spacing
0.068300
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
600

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Collection Manager
Data uploaded by
Barbara Sulbaran
Publication status
Restricted Download
Download reviewer
Jessie Maisano; Collection Manager
IP holder
Smithsonian Institution, National Museum of Natural History
Copyright statement
 Copyright Undetermined
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
EF-0334961, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: oUTCT provided access to these dataoriginally appearing in Gauthier et al., 2012, with data collection funded by NSF EF-0334961 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M98642
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object USNM:HERP:USNM 205722 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1200
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000098642: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000098642: Head [CTImageSeries] [Etc] (this media)