Media 000115977: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
AM:Ichthyology:I.40438-001 Neoceratodus forsteri
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000115977 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000115977
Media type
Volumetric Image Series
Object element or part
head
Object represented
AM:Ichthyology:I.40438-001
Object taxonomy
Neoceratodus forsteri
Object organization
Australian Museum provider for OZCAM
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 2115\\r\\n\\r\\nCriswell:\\r\\nneoce: Scans of the head and pectoral girdle of Neoceratodus forsteri (Australian Museum I.40438-001, Australia, QLD, Breeding ponds at Macquarie University) for Katharine Criswell of the University of Texas at Austin. Specimen scanned by Matthew Colbert 14 August 2009. \\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 200 kV, 0.18 mA, intensity control off, high-power mode, no filter, empty container wedge, no offset, slice thickness 2 lines ( = 0.09546 mm), S.O.D. 130 mm, 1400 views, 3 samples per view, inter-slice spacing 2 lines ( = 0.09546 mm), field of reconstruction 40 mm (maximum field of view 43.24598 mm), reconstruction offset 5000, reconstruction scale 4000. Acquired with 19 slices per rotation and 15 slices per set. Spike- and ring-removal processing done by Satomi Ishihama based on correction of raw sinogram data using IDL routines “RK_SinoDespike” with default parameters and “RK_SinoRingProcSimul” with the parameter “bestof5=11.” Deleted last four duplicate slices from each rotation. Deleted first 7 blank slices. Total final slices =698.\\r\\n
Creator
--
Date created
--
Date uploaded
May 11, 2020

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
780 MB
Image width
831
Image height
918
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.039060
Y pixel spacing
0.039060
Z pixel spacing
0.095460
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
698

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Jessie Maisano
Publication status
Restricted Download
Download reviewer
Jessie Maisano
IP holder
Australian Museum
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EAR-0646848, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Katharine Criswell provided access to these data , with data collection funded in part by NSF EAR-0646848 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M115977
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AM:Ichthyology:I.40438-001 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
1400
Voltage
200
Power
--
Amperage
180
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000115977: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000115977: Head [CTImageSeries] [Etc] (this media)