Media 000116311: Brain Endocast
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
amnh:birds:SKEL-3167 Steatornis caripensis
Managed by
Thomas Trombone

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Related Media (1)

Media produced from the same original imaging that created Media 000116311 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000116311 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
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GENERAL DETAILS Field Definitions

Media ID
000116311
Media type
Mesh
Object element or part
brain endocast
Object represented
amnh:birds:SKEL-3167
Object taxonomy
Steatornis caripensis
Object organization
AMNH Ornithology Collection
Side
NotApplicable
Orientation
--
Short description
Brain endocast STL
Full description
Migrated MorphoSource 1 Media File Title: Brain endocast STL Migrated MorphoSource 1 Media Group Title: STL
Creator
--
Date created
--
Date uploaded
May 20, 2020

FILE OBJECT DETAILS Field Definitions

File name
AMNH_Birds_SKEL3167_Steatornis-caripensis.stl
File format(s)
STL
File size
28.6 MB
Points
300000
Polygons
599952
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
19.916, 22.623, 24.270
Centroid coordinates
34.662, -31.055, 17.023
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000116273: Skull [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Thomas Trombone
Data uploaded by
Catherine Early
Publication status
Restricted Download
Download reviewer
Thomas Trombone
IP holder
Catherine M. Early
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI 1701665 to Friday Harbor Labs; American Museum of Natural History Chapman Ornithology Grant to C. M. Early; NSF Graduate Research Fellowship to C. M. Early (DGE-1060934, DGE-1645419); NSF grants to L. M. Witmer (IOB-0517257, IOS-1050154, IOS-1456503)
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: C. M. Early, A. N. Iwaniuk, R. C. Ridgely, and L. M. Witmer provided access to these dataoriginally appearing in Early et al., 2020, the generation of which was funded by an NSF Graduate Research Fellowship to CME (DGE-1060934, DGE-1645419), American Museum of Natural History Chapman Ornithology Grant to CME, NSF grants to LMW (IOB-0517257, IOS-1050154, IOS-1456503), and NSF DBI 1701665 to Friday Harbor Labs. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M116311
MorphoSource DOI
 doi:10.17602/M2/M116311
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:birds:SKEL-3167 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Catherine Early
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
1175000
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
65
Power
--
Amperage
123
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000116273: Skull [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Catherine Early
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000116273: Skull [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000116273: Skull [CTImageSeries] [Etc] was processed to create derived Media 000116311: Brain Endocast [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Catherine Early
Event date
February 23, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000116311: Brain Endocast [Mesh] [CT] (this media)