Media 000116943: Element Unspecified
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000116943: Element Unspecified
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000116943
Media type
Volumetric Image Series
Object element or part
--
Object represented
Object taxonomy
Poecilia reticulata
Object organization
Side
--
Orientation
--
Short description
zipped bmp stack
Full description
Migrated MorphoSource 1 Media File Title: zipped bmp stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives
Creator
--
Date created
--
Date uploaded
June 01, 2020
FILE OBJECT DETAILS Field Definitions
File name
Poecilia_reticulata_YALP083CO_body.zip
File format(s)
ZIP archive, BMP
File size
1.16 GB
Image width
820
Image height
876
Color space
--
Color depth
8
Compression
None; BI_RGB; 0
X pixel spacing
0.008168
Y pixel spacing
0.008168
Z pixel spacing
0.008168
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
4,002
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
--
IP holder
Emily Kane
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-1701665
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Emily Kane provided access to these data , the collection of which was funded by NSF DBI-1701665.. The files were downloaded from www.MorphoSource.org, Duke University.; Blackburn, D.C., et al. 2024. Increasing the impact of vertebrate scientific collections through 3D-imaging: the openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186. https://doi.org/10.1093/biosci/biad120
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
l-eak:YALP083CO
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Jonathan Huie
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
1.11
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
3
Projections
800
Voltage
65
Power
0.007995
Amperage
123
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000116943: Element Unspecified [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Jonathan Huie
Event date
--
Software
--
Description
--
Description attachment
None