Media 000140438: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
uf:mammals:23955 Dipodomys merriami
Managed by
Digital Imaging Florida Museum

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Related Media (0)

Media produced from the same original imaging that created Media 000140438 (this media). Includes all media associated with this media through an imaging and processing workflow.

No related media found.

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Team
· Public

TAGS

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GENERAL DETAILS Field Definitions

Media ID
000140438
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
uf:mammals:23955
Object taxonomy
Dipodomys merriami
Object organization
FLMNH Division of Mammals
Side
NotApplicable
Orientation
--
Short description
zipped 16 bit Tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped 16 bit Tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives Migrated MorphoSource 1 Media File Description: Bones segmented from raw file using 3D Slicer.
Creator
--
Date created
--
Date uploaded
July 25, 2020

FILE OBJECT DETAILS Field Definitions

File name
Dipodomys-merriami--23955-.zip
File format(s)
ZIP archive, TIFF
File size
110 MB
Image width
1558
Image height
1186
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.035500
Y pixel spacing
0.035500
Z pixel spacing
0.035500
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,594

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Digital Imaging Florida Museum
Data uploaded by
Andrew McIntosh
Publication status
Open Download
Download reviewer
Digital Imaging Florida Museum; Verity Mathis
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN; NSF DBI-1701714; NSF DBI- 1701665
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Verity Mathis (University of Florida's Natural History Museum) provided access to these data oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
Agreement File

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M140438
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object uf:mammals:23955 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Andrew McIntosh, William Garcia, & Lauren Abbott
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1.175
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
4
Projections
800
Voltage
65
Power
0.007995
Amperage
123
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000140438: Whole Body [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Andrew McIntosh, William Garcia, & Lauren Abbott
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000140438: Whole Body [CTImageSeries] [Etc] (this media)