Media 000158936: Stained Syrinx
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Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000158936: Stained Syrinx
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000158936
Media type
Volumetric Image Series
Object element or part
stained syrinx
Object represented
Object taxonomy
Pelecanus occidentalis
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - stained syrinx
Full description
University of Texas High-Resolution X-ray CT Facility Archive
Clarke:
PelecanusRMNH_5092440_: Scan of an iodine stained syrinx from a Brown Pelican (Pelecanus occidentalis; RMNH 5092440; TX: Cameron Co; 4 Nov 2015) for Julia Clarke of The University of Texas at Austin. Specimen scanned by Matthew Colbert on 15 March 2017.
16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 120 kV, 0.15 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 1 fps, 1x1 binning, no flip, source to object 383.783 mm, source to detector 1316.746 mm, continuous CT scan, no frames averaged, 0 skip frames, 1800 projections, 5 gain calibrations, 15 mm calibration phantom, data range [-1.5, 12.0] (grayscale adjusted from NSI defaults), beam-hardening correction = 0.125. Voxel size = 66.4 μm. Total slices = 1896.
Creator
Matthew Colbert
Date created
March 15, 2017
Date uploaded
August 30, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
1010 MB
Image width
782
Image height
472
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.066400
Y pixel spacing
0.066400
Z pixel spacing
0.066400
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,896
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Nationaal Natuurhistorische Museum
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EAR-1251922, DBI-1902242
Publisher
oUTCT PEN
Cite as
Julia Clarke provided access to these data , with data collection funded by the Gordon and Betty Moore Foundation Grant 4498 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
rmnh:5092440
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
1800
Voltage
120
Power
--
Amperage
150
Surrounding material
0.25 pF gain
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000158936: Stained Syrinx [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000158936: Stained Syrinx [CTImageSeries] [CT] (this media)