Media 000161265: Vertebrae
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
AMNH:Mammals:M-241118 Sciurocheirus alleni
Managed by
AMNH Mammalogy Department

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Media produced from the same original imaging that created Media 000161265 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Team
· Public
Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000161265
Media type
Volumetric Image Series
Object element or part
vertebrae
Object represented
AMNH:Mammals:M-241118
Object taxonomy
Sciurocheirus alleni
Object organization
AMNH Mammal Collections
Side
--
Orientation
--
Short description
--
Full description
University of Texas High-Resolution X-ray CT Facility Archive Nishimura: setD: Nine sets of primate cervical vertebrae and thoracic vertebrae scanned together; archived as separate sets for Abigail Nishimura of Stony Brook University. Specimens scanned by Matthew Colbert on 24 July 2017. setD: Scan parameters: NSI scanner. Fein Focus Microfocal source, 160 kV, 0.18 mA, aluminum filter, Perkin Elmer detector, 0.25 pF gain, 1 fps, 1x1 binning, no flip, source to object 179.14 mm, source to detector 1316.731 mm, continuous CT scan, no frames averaged, 0 skip frames, 3000 projections, 5 gain calibrations, 5 mm calibration phantom, data range [-2.0, 20.0] (grayscale adjusted from NSI defaults), beam-hardening correction = 0.1. Voxel size = 19.9 μm. Total slices = 3559. galall241118: C1 vertebra of Galago alleni (AMNH 241118; Africa: Cameroon, Ouest Region, 15 km South of Mamfe). 16bitTIFF: 273 slices; scan parameters as above. 8bitJPG: 8bit jpg version of the above images.
Creator
Matthew Colbert
Date created
July 24, 2017
Date uploaded
September 26, 2020

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
171 MB
Image width
860
Image height
433
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.019900
Y pixel spacing
0.019900
Z pixel spacing
0.019900
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
273

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
AMNH Mammalogy Department
Data uploaded by
Barbara Sulbaran
Publication status
Restricted Download
Download reviewer
Jessie Maisano; Neil Duncan; AMNH Mammalogy Department
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
oUTCT provided access to these data, funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M161265
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-241118 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
3000
Voltage
160
Power
--
Amperage
180
Surrounding material
0.25 pF gain
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000161265: Vertebrae [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000161265: Vertebrae [CTImageSeries] [CT] (this media)