Media 000164233: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
CAS:HERP:263031 Cordylosaurus subtessellatus
Managed by
Lauren Scheinberg

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Media produced from the same original imaging that created Media 000164233 (this media). Includes all media associated with this media through an imaging and processing workflow.

No related media found.

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Team
· Public

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GENERAL DETAILS Field Definitions

Media ID
000164233
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
CAS:HERP:263031
Object taxonomy
Cordylosaurus subtessellatus
Object organization
CAS Herpetology (HERP)
Side
--
Orientation
--
Short description
Tomogram stack (16bit tifs)
Full description
Migrated MorphoSource 1 Media File Title: Tomogram stack (16bit tifs) Migrated MorphoSource 1 Media Group Title: MicroCT volume and derivatives of cas:herp:263031, Cordylosaurus subtessellatus
Creator
--
Date created
June 16, 2021
Date uploaded
October 07, 2020

FILE OBJECT DETAILS Field Definitions

File name
CAS-H-263031.zip
File format(s)
ZIP archive, TIFF
File size
259 MB
Image width
1230
Image height
319
Color space
BlackIsZero
Color depth
16
Compression
PackBits
Series type
Reconstructed image stack
X pixel spacing
0.026828
Y pixel spacing
0.026828
Z pixel spacing
0.026828
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,063

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Lauren Scheinberg
Data uploaded by
Edward Stanley
Publication status
Open Download
Download reviewer
Lauren Scheinberg
IP holder
California Academy of Sciences
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC-SA Attribution-NonCommercial-ShareAlike 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M164233
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object CAS:HERP:263031 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Edward Stanley
Event date
May 13, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.200098
Flux normalization
Yes
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
3
Projections
2200
Voltage
100
Power
0.02
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000164233: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Edward Stanley
Event date
May 13, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000164233: Whole Body [CTImageSeries] [CT] (this media)