Media 000350494: Midshaft Tarsometatarsus
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ivpp:v:21693 Gansus yumenensis
Managed by
MONFROY_reviewer

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Media produced from the same original imaging that created Media 000350494 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000350494
Media type
Volumetric Image Series
Object element or part
Midshaft Tarsometatarsus
Object represented
ivpp:v:21693
Object taxonomy
Gansus yumenensis
Object organization
Institute of Vertebrate Paleontology and Paleoanthropology
Side
Right
Orientation
Proximodistal
Short description
Area of interest of the midshaft
Full description
50 slices of the midshaft with the bone cortex, the neurovascular network and osteocyte lacunae.
Creator
--
Date created
--
Date uploaded
March 18, 2021

FILE OBJECT DETAILS Field Definitions

File name
Gansus_yumenensis_-_Tarsometatarsus_-_Area_of_interest__osteocyte_lacunae_.zip
File format(s)
ZIP archive, TIFF
File size
42.5 MB
Image width
1505
Image height
739
Color space
RGB
Color depth
8/8/8
Compression
PackBits
Series type
Reconstructed image stack
X pixel spacing
0.006581
Y pixel spacing
0.006581
Z pixel spacing
0.006581
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
54

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (1 step)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
TOMCAT Beamline X02DA, Swiss Light Source (Paul Scherrer Institut)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
MONFROY_reviewer
Data uploaded by
MONFROY_reviewer
Publication status
Restricted Download
Download reviewer
MONFROY_reviewer
IP holder
--
Copyright statement
 No Known Copyright
Creative Commons license
 License Terms Unknown
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Prohibited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
PaleoBioImaging Lab, Evolutionary Biodiversity Research Group, Center for Interdisciplinary Biosciences, Technology and Innovation Park, Pavol Jozef Šafárik University in Košice
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/350494
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ivpp:v:21693 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Swiss Light Source (Paul Scherrer Institut)
Creator
--
Event date
March 19, 2021
Software
--
Description
TOmographic Microscopy and Coherent rAdiology experiments
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
400 ms per projection
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
4001 equiangularly spaced projections over 180 degrees
Voltage
35 keV
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
Transmission
Detector type
Scintillator (Phosphor used)
Detector pixels X
1.625
Detector pixels size X
4.160
Detector pixels Y
2.860
Detector pixels size Y
1.625
Detector configuration
--
Source object distance
--
Source detector distance
50 mm
Target material
Bone
Rotation number
180
Phase contrast
Yes
Optical magnification
Yes
Acquisition type
Sequenced

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 1 activity to create derived Media 000350494: Midshaft Tarsometatarsus [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
MONFROY, Quentin
Event date
March 18, 2021
Software
VGStudio Max 3.0
Description
Segmentation
Description attachment
None

Processing Activity 1: Reconstruction

Software
VGStudio Max 3.0
Description

Media produced by this event on MorphoSource

Media 000350494: Midshaft Tarsometatarsus [CTImageSeries] [CT] (this media)