Media 000359462: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Bird:MVZ:Bird:175892 Pyrenestes ostrinus
Managed by
Carol Spencer

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Media produced from the same original imaging that created Media 000359462 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000359462
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
MVZ:Bird:MVZ:Bird:175892
Object taxonomy
Pyrenestes ostrinus
Object organization
Museum of Vertebrate Zoology (MVZ) Bird Collection (Arctos)
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
fluid-preserved bird
Creator
--
Date created
--
Date uploaded
April 22, 2021

FILE OBJECT DETAILS Field Definitions

File name
MVZ_B_175892_Pyrenestes_ImageStack.zip
File format(s)
ZIP archive, TIFF
File size
258 MB
Image width
531
Image height
470
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.065842
Y pixel spacing
0.065842
Z pixel spacing
0.065842
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,608

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Carol Spencer
Publication status
Restricted Download
Download reviewer
Carol Spencer; Carla Cicero; Museum of Vertebrate Zoology
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN; NSF DBI-1701714; NSF DBI-1701797; NSF DBI-1702421
Publisher
--
Cite as
Museum of Vertebrate Zoology at Berkeley provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/359462
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Bird:MVZ:Bird:175892 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Coldren, Daryl
Event date
April 11, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.25
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
700
Voltage
110
Power
0.024
Amperage
220
Surrounding material
Air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000359462: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Baumgart, Stephanie
Event date
April 11, 2021
Software
VGStudio Max 3.3
Description
calibrated histogram to highest and lowest densities, cropped ROI down to the specimen
Description attachment
None

Media produced by this event on MorphoSource

Media 000359462: Whole Body [CTImageSeries] [CT] (this media)