Media 000366416: Sacrum
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
amnh:mammals:103654 Macaca fascicularis
Managed by
AMNH Mammalogy Department

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Media produced from the same original imaging that created Media 000366416 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000366416
Media type
Volumetric Image Series
Object element or part
sacrum
Object represented
amnh:mammals:103654
Object taxonomy
Macaca fascicularis
Object organization
AMNH Mammal Collections
Side
--
Orientation
--
Short description
HRXCT scan - sacrum
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2146 Russo: mfasc: Scans of two sacra of Macaca fascicularis fascicularis (AMNH103649 [male] at top of scan field and AMNH103654 [female] at bottom of scan field; Eurasia: Indonesia, Borneo, Kalimantan, Tengah, Sampit-Parit [Tjempaga]) for Gabrielle Russo of The University of Texas at Austin. Specimens scanned by Matthew Colbert 4 November 2009. 16bitrot: 1024x1024 16-bit TIFF images. II, 210 kV, 0.14 mA, intensity control off, high-power mode, no filter, air wedge, no offset, slice thickness 1 line ( = 0.04773 mm), S.O.D. 137 mm, 1600 views, 1 sample per view, inter-slice spacing 1 line ( = 0.04773 mm), field of reconstruction 45 mm (maximum field of view 45.57461 mm), reconstruction offset 4300, reconstruction scale 6200. Acquired with 31 slices per rotation and 25 slices per set. Drift-removal processing done by Satomi Ishihama based on correction of raw sinogram data using IDL routine “RK_SinoDeDrift” with default parameters. Reconstructed with rotation angle = 3 degrees. Deleted last 6 duplicate slices from each rotation. Rotation correction processing done by Satomi Ishihama using IDL routine “DoRotationCorrection.” Deleted first 8 and last 13 blank slices. Total final slices =1054.
Creator
Matthew Colbert
Date created
November 04, 2009
Date uploaded
June 03, 2021

FILE OBJECT DETAILS Field Definitions

File name
AMNH_103654.zip
File format(s)
ZIP archive, TIFF
File size
1.7 GB
Image width
944
Image height
558
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.043950
Y pixel spacing
0.043950
Z pixel spacing
0.047730
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,054

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
AMNH Mammalogy Department
Data uploaded by
Jessie Maisano
Publication status
Restricted Download
Download reviewer
Jessie Maisano; Neil Duncan; AMNH Mammalogy Department
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by Gabrielle Russo. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/366416
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:mammals:103654 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
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Event date
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Software
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Description
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Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Detector pixels Y
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000366416: Sacrum [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
June 03, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000366416: Sacrum [CTImageSeries] [CT] (this media)