Media 000369095: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Bird:MVZ:Bird:175315 Loxia curvirostra bendirei
Managed by
Carol Spencer

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Media produced from the same original imaging that created Media 000369095 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000369095
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
MVZ:Bird:MVZ:Bird:175315
Object taxonomy
Loxia curvirostra bendirei
Object organization
Museum of Vertebrate Zoology (MVZ) Bird Collection (Arctos)
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
microCT volume and derivatives, fluid-preserved bird, pathological tissue growth throughout body
Creator
Coldren, Daryl
Date created
April 26, 2021
Date uploaded
June 24, 2021

FILE OBJECT DETAILS Field Definitions

File name
MVZ_B_175315_Loxia_ImageStack.zip
File format(s)
ZIP archive, TIFF
File size
392 MB
Image width
536
Image height
572
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.065128
Y pixel spacing
0.065128
Z pixel spacing
0.065128
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,834

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Carol Spencer
Publication status
Restricted Download
Download reviewer
Carla Cicero; Carol Spencer; Museum of Vertebrate Zoology
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN; NSF DBI-1701714; NSF DBI-1701797; NSF DBI-1702421
Publisher
--
Cite as
Museum of Vertebrate Zoology at Berkeley provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/369095
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Bird:MVZ:Bird:175315 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Coldren, Daryl
Event date
April 26, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
250
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
800
Voltage
110
Power
0.024
Amperage
220
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000369095: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Coldren, Daryl
Event date
April 26, 2021
Software
VGStudio Max 3.3
Description
calibrated histogram to highest and lowest densities, cropped ROI down to the specimen
Description attachment
None

Media produced by this event on MorphoSource

Media 000369095: Whole Body [CTImageSeries] [CT] (this media)