Media 000369759: Cranial Elements
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
mor:MOR 10913a Alphadon halleyi
Managed by
David Varricchio

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Related Media (1)

Media produced from the same original imaging that created Media 000369759 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000369759 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
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GENERAL DETAILS Field Definitions

Media ID
000369759
Media type
Volumetric Image Series
Object element or part
cranial elements
Object represented
mor:MOR 10913a
Object taxonomy
Alphadon halleyi
Object organization
Museum of the Rockies
Side
NotApplicable
Orientation
--
Short description
Block containing one braincase specimen yielded an associated right maxilla and isolated teeth (Freimuth et al. 2021, fig. s1). Has been converted from 32bit to 16bit.
Full description
--
Creator
Julie Winchester
Date created
July 09, 2021
Date uploaded
July 09, 2021

FILE OBJECT DETAILS Field Definitions

File name
Alphadon-skull-dinner_7-12-12-9-Y-Slices-16-bit.zip
File format(s)
ZIP archive, TIFF
File size
2.81 GB
Image width
1425
Image height
1076
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.024400
Y pixel spacing
0.024400
Z pixel spacing
0.024400
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,307

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Derived directly from
Media 000369549: Cranial Elements [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging X5000, X-ray Computed Tomography Facility (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
David Varricchio
Data uploaded by
David Varricchio
Publication status
Restricted Download
Download reviewer
Gregory Wilson; David Varricchio
IP holder
Montana State University
Copyright statement
 In Copyright
Creative Commons license
 License Terms Unknown
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/369759
MorphoSource DOI
 10.17602/M2/M369759
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mor:MOR 10913a was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
X-ray Computed Tomography Facility (University of Washington)
Creator
Bannick, Alexandria
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000369549: Cranial Elements [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000369549: Cranial Elements [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000369549: Cranial Elements [CTImageSeries] [CT] was processed with 2 activities to create derived Media 000369759: Cranial Elements [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Julie Winchester
Event date
July 09, 2021
Software
Fiji ImageJ
Description
--
Description attachment
None

Processing Activity 1: Bit Depth Change

Software
Fiji ImageJ
Description
Changed from 32 bit to 16 bit.

Processing Activity 2: Histogram Editing

Software
Fiji ImageJ
Description
After bit depth change, stack appeared washed out (too many white pixels). Reset the brightness/contrast histogram, and applied the reset LUT to all stack images.

Media produced by this event on MorphoSource

Media 000369759: Cranial Elements [CTImageSeries] [CT] (this media)