Media 000377953: Cranium
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
mhng:zoo:1627.053 Zaedyus pichiy
Managed by
Kévin Le Verger

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Media produced from the same original imaging that created Media 000377953 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000377953
Media type
Volumetric Image Series
Object element or part
Cranium
Object represented
mhng:zoo:1627.053
Object taxonomy
Zaedyus pichiy
Object organization
MHNG Zoological Collections
Side
NotApplicable
Orientation
Coronal
Short description
Cranium of Zaedyus (Muséum d'histoire naturelle de Genève MHNG-Zoo-1627.053 - juvenile)
Full description
Specimen used in a study focused on the endocranial anatomy of Cingulata. The 3D models are available on MorphoMuseum.
Creator
Le Verger, Kévin
Date created
September 01, 2018
Date uploaded
August 16, 2021

FILE OBJECT DETAILS Field Definitions

File name
Zaedyus_pichiy_MHNG_1627.053_contrast_rotate_crop_tif8_34.7198um.zip
File format(s)
ZIP archive, TIFF
File size
113 MB
Image width
1024
Image height
829
Color space
BlackIsZero
Color depth
8
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.034720
Y pixel spacing
0.034720
Z pixel spacing
0.034720
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,049

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (4 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
RX Solutions EasyTom 150, Montpellier Resources Imagerie: Institut des Sciences de l’Evolution de Montpellier (MRI-ISEM) (Université de Montpellier)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Kévin Le Verger
Data uploaded by
Kévin Le Verger
Publication status
Open Download
Download reviewer
Kévin Le Verger
IP holder
MHNG
Copyright statement
 No Copyright - Non-Commercial Use Only
Creative Commons license
 License Terms Unknown
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
Encouraged But Not Required
Funding attribution
none
Publisher
MHNG
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/377953
MorphoSource DOI
Not assigned
External identifier
10.1111/joa.13512
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mhng:zoo:1627.053 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Montpellier Resources Imagerie: Institut des Sciences de l’Evolution de Montpellier (MRI-ISEM) (Université de Montpellier)
Creator
Le Verger, Kévin
Event date
September 01, 2018
Software
--
Description
Le Verger, K.; González Ruiz, L.; Billet, G. 2021. Comparative anatomy and phylogenetic contribution of intracranial osseous canals and cavities in armadillos and glyptodonts (Xenarthra, Cingulata). Journal of Anatomy 00: 1-30pp. DOI: 10.1111/joa.13512
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
Yes
Pixel spacing calibration
Geometry
Shading correction
Yes
Frame averaging
12.5
Projections
2880
Voltage
60
Power
--
Amperage
500
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
Direct (X-Ray photoconductor)
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
2
Phase contrast
No
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 4 activities to create derived Media 000377953: Cranium [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
Description

Processing Activity 2: Bit Depth Change

Software
ImageJ
Description
16-bit to 8-bit

Processing Activity 3: Crop

Software
ImageJ
Description
At the specimen level

Processing Activity 4: Transform: Rotation

Software
ImageJ
Description
To fix the coronal view

Media produced by this event on MorphoSource

Media 000377953: Cranium [CTImageSeries] [CT] (this media)