Media 000379317: Skull & Endocast Segmentation
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000379317: Skull & Endocast Segmentation
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000379317
Media type
Mesh
Object element or part
Skull & Endocast segmentation
Object represented
Object taxonomy
Eoarctos vorax
Object organization
Side
--
Orientation
--
Short description
--
Full description
--
Creator
--
Date created
August 23, 2021
Date uploaded
August 23, 2021
FILE OBJECT DETAILS Field Definitions
File name
Skull___Endocast.zip
File format(s)
ZIP archive, PLY
File size
40.2 MB
Points
299615
Polygons
599248
Map type
--
UV coordinates
False
Vertex color
True
Bounding box dimensions
27.782, 53.228, 24.949
Centroid coordinates
35.159, 77.502, 27.843
Units of point coordinates
--
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(7 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1176, UCLA School of Dentistry (University of California, Los Angeles)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Xiaoming Wang and Stuart White
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
usnm:paleobiology:pal637259
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UCLA School of Dentistry (University of California, Los Angeles)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 4 activities
to create
derived
Media 000377577: Skull [CTImageSeries] [CT].
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Processing Activity 1: Reconstruction
Software
SkyScan
Description
Changed projection images to slices
Processing Activity 2: Bit Depth Change
Software
FIJI
Description
16 to 8 bits
Processing Activity 3: Crop
Software
FIJI
Description
Reduced size and number of images to skull region
Processing Activity 4: Histogram Editing
Software
FIJI
Description
Optimized for bone visualization
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000377577: Skull [CTImageSeries] [CT]
was processed
with 3 activities
to create
derived
Media 000379317: Skull & Endocast Segmentation [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Processing Activity 1: Simplification
Software
FIJI
Description
Binned dataset by 2x to reduce computational load
Processing Activity 2: Reconstruction
Software
Avizo
Description
Segmented endocast and skull
Processing Activity 3: Reconstructed Tomography to Mesh
Software
Avizo
Description
Exported ply files of segmented endocast and skull
Media produced by this event on MorphoSource
Media 000379317: Skull & Endocast Segmentation [Mesh] [CT] (this media)