Media 000407037: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ANSP:FISH:141691 Atrophacanthus japonicus
Managed by
Emily Troyer

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Media produced from the same original imaging that created Media 000407037 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000407037
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
ANSP:FISH:141691
Object taxonomy
Atrophacanthus japonicus
Object organization
Academy of Natural Sciences of Drexel Ichthyology Collection
Side
--
Orientation
--
Short description
Atrophacanthus japonicus slice data
Full description
--
Creator
Troyer, Emily
Date created
August 12, 2021
Date uploaded
December 10, 2021

FILE OBJECT DETAILS Field Definitions

File name
Image_Series_Atrophacanthus_japonicus.zip
File format(s)
ZIP archive, JPEG
File size
1.95 MB
Image width
240
Image height
281
Color space
YCbCr
Color depth
8
Compression
JPEG
Series type
Reconstructed image stack
X pixel spacing
0.142000
Y pixel spacing
0.142000
Z pixel spacing
0.142000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
654

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (1 step)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Emily Troyer
Data uploaded by
Emily Troyer
Publication status
Open Download
Download reviewer
Emily Troyer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/407037
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ANSP:FISH:141691 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Troyer, Emily
Event date
August 12, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
1700
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
50
Power
--
Amperage
160
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 1 activity to create derived Media 000407037: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
NRecon
Description

Media produced by this event on MorphoSource

Media 000407037: Whole Body [CTImageSeries] [CT] (this media)