Media 000412588: Femur
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ummp:vp:101963 Carpolestes simpsoni
Managed by
Douglas Boyer

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Related Media (1)

Media produced from the same original imaging that created Media 000412588 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000412588 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

In Collections

Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000412588
Media type
Mesh
Object element or part
femur
Object represented
ummp:vp:101963
Object taxonomy
Carpolestes simpsoni
Object organization
Museum of Paleontology
Side
Left
Orientation
--
Short description
--
Full description
--
Creator
Doug Boyer
Date created
January 11, 2022
Date uploaded
January 11, 2022

FILE OBJECT DETAILS Field Definitions

File name
UMMP101963_Csimps_Lfem.ply
File format(s)
PLY
File size
106 MB
Points
1417327
Polygons
2834690
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
6.471, 29.747, 4.374
Centroid coordinates
12.093, 15.219, 3.074
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (4 steps)
Derived directly from
Media 000412585: Femur [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 40, Stony Brook University Center for Biotechnology (Stony Brook University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Douglas Boyer
Data uploaded by
Douglas Boyer
Publication status
Restricted Download
Download reviewer
Jonathan Bloch; Douglas Boyer
IP holder
University of Michigan Museum of Paleontology
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1317525 (to DM Boyer and ER Seiffert), 1552848 (to DM Boyer) and Duke University Trinity College of Arts and Sciences
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/412588
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ummp:vp:101963 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Stony Brook University Center for Biotechnology (Stony Brook University)
Creator
Doug Boyer
Event date
August 25, 2009
Software
scanco medical software
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 3 activities to create derived Media 000412585: Femur [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Doug Boyer
Event date
January 11, 2022
Software
imagej, avizo, scanco medical
Description
scan was reconstructed from sinograms with scanco medical software in 2009. Rotation (imagej) and cropping (avizo) were done in 2022
Description attachment
None

Processing Activity 1: Reconstruction

Software
scanco medical software
Description

Processing Activity 2: Transform: Rotation

Software
imagej
Description

Processing Activity 3: Crop

Software
avizo
Description

Media produced by this event on MorphoSource

Media 000412585: Femur [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000412585: Femur [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000412588: Femur [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Doug Boyer
Event date
January 11, 2022
Software
avizo
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
avizo
Description

Media produced by this event on MorphoSource

Media 000412588: Femur [Mesh] [CT] (this media)