Media 000412847: Metatarsal 3 (Mt3)
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000412847: Metatarsal 3 (Mt3)
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
Related Media (1)
Child Media (1)
Mesh
· Restricted Download
In Collections
Project
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000412847
Media type
Volumetric Image Series
Object element or part
metatarsal 3 (mt3)
Object represented
Object taxonomy
Carpolestes simpsoni
Object organization
Side
--
Orientation
--
Short description
--
Full description
bone #220 in original skeleton documentation. ID as shown in Bloch and Boyer 2002
Creator
Doug Boyer
Date created
January 12, 2022
Date uploaded
January 12, 2022
FILE OBJECT DETAILS Field Definitions
File name
UMMP101963_Csimps_220-mt3.zip
File format(s)
ZIP archive, DICOM
File size
59.9 MB
Image width
197
Image height
719
Color space
--
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.010000
Y pixel spacing
0.010000
Z pixel spacing
0.010000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
255
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(3 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 40, Stony Brook University Center for Biotechnology (Stony Brook University)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
University of Michigan Museum of Paleontology
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1317525 (to DM Boyer and ER Seiffert), 1552848 (to DM Boyer) and Duke University Trinity College of Arts and Sciences
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
ummp:vp:101963
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Stony Brook University Center for Biotechnology (Stony Brook University)
Creator
Doug Boyer
Event date
August 25, 2009
Software
scanco medical software
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 3 activities
to create
derived
Media 000412847: Metatarsal 3 (Mt3) [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Doug Boyer
Event date
January 12, 2022
Software
imagej, scanco medical, avizo
Description
reconstruction done with scanco medical in 2009 from sinograms
Description attachment
None
Processing Activity 1: Reconstruction
Software
scanco medical software
Description
Processing Activity 2: Transform: Rotation
Software
imagej
Description
Processing Activity 3: Crop
Software
imagej
Description
avizo