Media 000413003: Trunk Vertebrae
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
FMNH:Amphibians and Reptiles:178534 Gerrhopilus mirus
Managed by
Sharon Grant

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Related Media (2)

Media produced from the same original imaging that created Media 000413003 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000413003 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

Other Related Media (1)

Other media associated with the original imaging that produced Media 000413003 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Mesh
· Restricted Download

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GENERAL DETAILS Field Definitions

Media ID
000413003
Media type
Mesh
Object element or part
trunk vertebrae
Object represented
FMNH:Amphibians and Reptiles:178534
Object taxonomy
Gerrhopilus mirus
Object organization
Field Museum of Natural History (Zoology) Amphibian and Reptile Collection
Side
--
Orientation
--
Short description
--
Full description
--
Creator
Jaimi Gray
Date created
January 12, 2022
Date uploaded
January 12, 2022

FILE OBJECT DETAILS Field Definitions

File name
vertebrae_trunk_3.ply
File format(s)
PLY
File size
1.07 MB
Points
22348
Polygons
44738
Map type
--
UV coordinates
False
Vertex color
True
Bounding box dimensions
4.081, 1.236, 0.927
Centroid coordinates
184.844, 4.848, 28.983
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000412859: Whole Body [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 620 Versa x-ray microscope (xrm), UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Sharon Grant
Data uploaded by
Jaimi Gray
Publication status
Restricted Download
Download reviewer
Stephanie Baumgart; Janeen Jones; Kate Webbink; Joshua Mata
IP holder
--
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://www.fieldmuseum.org/science/research/use-collections-data-and-images

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/413003
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object FMNH:Amphibians and Reptiles:178534 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Jaimi Gray
Event date
December 22, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000412859: Whole Body [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
December 22, 2021
Software
GE Reconstruction Software and VG Studio Max
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000412859: Whole Body [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000412859: Whole Body [CTImageSeries] [CT] was processed to create derived Media 000413003: Trunk Vertebrae [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
January 12, 2022
Software
GE Reconstruction Software and VG Studio Max
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000413003: Trunk Vertebrae [Mesh] [CT] (this media)