Media 000418363: Pelvis
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
FMNH:Amphibians and Reptiles:53252 Ramphotyphlops braminus
Managed by
Sharon Grant

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Media Display

Related Media (1)

Media produced from the same original imaging that created Media 000418363 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000418363 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

In Collections

TAGS

GENERAL DETAILS Field Definitions

Media ID
000418363
Media type
Mesh
Object element or part
Pelvis
Object represented
FMNH:Amphibians and Reptiles:53252
Object taxonomy
Ramphotyphlops braminus
Object organization
Field Museum of Natural History (Zoology) Amphibian and Reptile Collection
Side
--
Orientation
--
Short description
--
Full description
--
Creator
S. Swank
Date created
January 07, 2021
Date uploaded
February 01, 2022

FILE OBJECT DETAILS Field Definitions

File name
Ib.53252.162.clean.ply
File format(s)
PLY
File size
28.2 MB
Points
2258178
Polygons
186299
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
11.381, 7.764, 9.662
Centroid coordinates
9.383, -4.535, 5.842
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
1 (2 steps)
Derived directly from
Media 000418360: Pelvis [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Perkin Elmer Quantum GX2, LUC Department of Biology (Loyola University Chicago)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Sharon Grant
Data uploaded by
Yoel Stuart
Publication status
Restricted Download
Download reviewer
Kate Webbink; Stephanie Baumgart; Joshua Mata; Janeen Jones
IP holder
--
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DEB-1456462
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://www.fieldmuseum.org/science/research/use-collections-data-and-images

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/418363
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
LUC Department of Biology (Loyola University Chicago)
Creator
S. Swank
Event date
January 07, 2021
Software
MeshLab 2020.12; InVesalius 3.1
Description
--
Description attachment
None
Reference attachment
None
Exposure time
4 min
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
65-70 kV
Power
--
Amperage
100-114 mA
Surrounding material
Plastic bag
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

Media produced by this event on MorphoSource

Media 000418360: Pelvis [CTImageSeries] [CT]

STEP 2: IMAGE PROCESSING

Raw Media 000418360: Pelvis [CTImageSeries] [CT] was processed with 2 activities to create derived Media 000418363: Pelvis [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
S. Swank
Event date
January 07, 2021
Software
MeshLab 2020.12; InVesalius 3.1
Description
--
Description attachment
None

Processing Activity 1: Photos to Mesh

Software
InVesalius
Description
created .ply file using a manual threshold

Processing Activity 2:

Software
Meshlab
Description
added landmarks, removed background

Media produced by this event on MorphoSource

Media 000418363: Pelvis [Mesh] [CT] (this media)