Media 000435750: Full
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
YPM:VZ:YPM HERR 018380 Caiman yacare
Managed by
Nelson Rios

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Media produced from the same original imaging that created Media 000435750 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000435750
Media type
Volumetric Image Series
Object element or part
full
Object represented
YPM:VZ:YPM HERR 018380
Object taxonomy
Caiman yacare
Object organization
Vertebrate Zoology Division - Herpetology, Yale Peabody Museum
Side
NotApplicable
Orientation
--
Short description
--
Full description
--
Creator
Zhang, Alice
Date created
April 19, 2022
Date uploaded
April 19, 2022

FILE OBJECT DETAILS Field Definitions

File name
az377_YPM_R.018380_full_01.zip
File format(s)
ZIP archive, TIFF
File size
8.02 GB
Image width
1830
Image height
1688
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.029192
Y pixel spacing
0.029192
Z pixel spacing
0.029192
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,934

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (1 step)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Chemical and Biophysical Instrumentation Center (Yale University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Nelson Rios
Data uploaded by
Alice Zhang
Publication status
Restricted Download
Download reviewer
Greg Watkins-Colwell
IP holder
Yale University
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701769; NSF DBI-1701714
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/435750
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object YPM:VZ:YPM HERR 018380 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Chemical and Biophysical Instrumentation Center (Yale University)
Creator
Zhang, Alice
Event date
April 12, 2022
Software
Inspect-X
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1
Flux normalization
Yes
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
3141
Voltage
73
Power
--
Amperage
73
Surrounding material
floral foam
X-ray tube type
--
Target type
Reflection
Detector type
--
Detector pixels X
2000
Detector pixels size X
0.2
Detector pixels Y
2000
Detector pixels size Y
0.2
Detector configuration
--
Source object distance
118.831300
Source detector distance
814.129200
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
Sequenced

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 1 activity to create derived Media 000435750: Full [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Zhang, Alice
Event date
April 19, 2022
Software
CT Pro
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
CT Pro
Description

Media produced by this event on MorphoSource

Media 000435750: Full [CTImageSeries] [CT] (this media)