Media 000436417: Whole Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000436417: Whole Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
Team
· Public
Project
· Public
Project
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000436417
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Nectarinia takazze
Object organization
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
microCT volume and derivatives, fluid-preserved bird
Creator
Magallanes, Isaac
Date created
January 26, 2022
Date uploaded
April 27, 2022
FILE OBJECT DETAILS Field Definitions
File name
FMNH_B_496758_Nectarinia_ImageStack.zip
File format(s)
ZIP archive, TIFF
File size
290 MB
Image width
651
Image height
517
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.043451
Y pixel spacing
0.043451
Z pixel spacing
0.043451
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,935
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Field Museum of Natural History
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-1701714; oVert TCN; NSF DBI-1702421
Publisher
--
Cite as
Blackburn, D.C., et al. 2024. Increasing the impact of vertebrate scientific collections through 3D-imaging: the openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186. https://doi.org/10.1093/biosci/biad120; Field Museum of Natural History provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
FMNH:Birds:496758
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Coldren, Daryl
Event date
January 26, 2022
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
0.25
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
800
Voltage
110
Power
0.024
Amperage
220
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000436417: Whole Body [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Magallanes, Isaac
Event date
January 26, 2022
Software
VGStudio Max 2.0
Description
calibrated histogram to highest and lowest densities, cropped ROI down to the specimen
Description attachment
None