Media 000439269: Head
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UCM:Herp:UCM:Herp:16072 Thamnophis melanogaster canescens
Managed by
Emily Braker

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Media Display

Related Media (1)

Media produced from the same original imaging that created Media 000439269 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000439269 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

In Collections

Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000439269
Media type
Mesh
Object element or part
head
Object represented
UCM:Herp:UCM:Herp:16072
Object taxonomy
Thamnophis melanogaster canescens
Object organization
UCM Herpetology Collection
Side
--
Orientation
--
Short description
microCT volume, zipped 16-bit tiff stack
Full description
Migrated MorphoSource 1 Media Group Title: microCT volume, zipped 16-bit tiff stack Migrated MorphoSource 1 Media File Description: Data inverted following CT reconstruction Record created by batch submission.
Creator
--
Date created
--
Date uploaded
May 04, 2022

FILE OBJECT DETAILS Field Definitions

File name
UCM_HERP_16072_Thamnophis_melanogaster_canescens_head_mesh.stl
File format(s)
STL
File size
672 MB
Points
2029316
Polygons
4060719
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
9.403, 25.526, 12.030
Centroid coordinates
5.517, 12.144, 6.682
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000439265: Head [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Emily Braker
Data uploaded by
Mackenzie Shepard
Publication status
Restricted Download
Download reviewer
Emily Braker
IP holder
University of Colorado Museum of Natural History
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC-SA Attribution-NonCommercial-ShareAlike 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oMeso PEN NSF DBI-2001474; oVert TCN partner NSF DBI-1701714
Publisher
--
Cite as
University of Colorado Museum of Natural History provided access to these data with data collection funded by NSF 2001474. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/439269
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UCM:Herp:UCM:Herp:16072 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)
Creator
Braker, Emily
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1.799999952
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
1
Projections
1601
Voltage
120
Power
1.0e-05
Amperage
83.33333333
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000439265: Head [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Braker, Emily
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000439265: Head [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000439265: Head [CTImageSeries] [CT] was processed to create derived Media 000439269: Head [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Braker, Emily
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000439269: Head [Mesh] [CT] (this media)