Media 000449913: Femur
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
AMNH:Mammals:M-86941 Galagoides demidoff
Managed by
Douglas Boyer

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Related Media (2)

Media produced from the same original imaging that created Media 000449913 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000449913 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Open Download

Other Related Media (1)

Other media associated with the original imaging that produced Media 000449913 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Image
· Open Download

In Collections

Project
· Public
Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000449913
Media type
Mesh
Object element or part
femur
Object represented
AMNH:Mammals:M-86941
Object taxonomy
Galagoides demidoff
Object organization
AMNH Mammal Collections
Side
Left
Orientation
--
Short description
from articulated individual
Full description
segmented from preserved specimen with articulated skeleton
Creator
doug boyer
Date created
July 12, 2022
Date uploaded
July 12, 2022

FILE OBJECT DETAILS Field Definitions

File name
HMS_AMNH-86941_Galago_femur.ply
File format(s)
PLY
File size
15.4 MB
Points
219305
Polygons
438606
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
25.503, 13.036, 25.495
Centroid coordinates
39.787, 41.744, 22.795
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Derived directly from
Media 000019397: Whole Body [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Douglas Boyer
Data uploaded by
Douglas Boyer
Publication status
Restricted Download
Download reviewer
Douglas Boyer; Neil Duncan
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1552848 (to DM Boyer)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/449913
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-86941 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
Hesham Sallam; Claire Carney
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
1
Projections
--
Voltage
122
Power
0.051606
Amperage
423
Surrounding material
fluid
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000019397: Whole Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Claire Carney, Hesham Sallam
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000019397: Whole Body [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000019397: Whole Body [CTImageSeries] [Etc] was processed with 2 activities to create derived Media 000449913: Femur [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
doug boyer
Event date
July 12, 2022
Software
avizo
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
avizo
Description
used segmentation editor to extract right femur

Processing Activity 2: Smoothing/Noise Reduction

Software
avizo
Description
cleaned up femur mesh

Media produced by this event on MorphoSource

Media 000449913: Femur [Mesh] [CT] (this media)