Media 000449969: Femur
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
dpc:ost:30 Microcebus murinus
Managed by
Douglas Boyer

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Related Media (2)

Media produced from the same original imaging that created Media 000449969 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000449969 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

Other Related Media (1)

Other media associated with the original imaging that produced Media 000449969 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Image
· Restricted Download

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000449969
Media type
Mesh
Object element or part
femur
Object represented
dpc:ost:30
Object taxonomy
Microcebus murinus
Object organization
Duke Lemur Center Museum of Natural History
Side
Right
Orientation
--
Short description
from articulated individual
Full description
--
Creator
doug boyer
Date created
July 12, 2022
Date uploaded
July 12, 2022

FILE OBJECT DETAILS Field Definitions

File name
DPC-030_femur.ply
File format(s)
PLY
File size
29.6 MB
Points
413204
Polygons
826408
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
20.070, 19.252, 21.457
Centroid coordinates
10.476, 10.605, 37.704
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Derived directly from
Media 000030424: Flexed Hindlimb [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Douglas Boyer
Data uploaded by
Douglas Boyer
Publication status
Restricted Download
Download reviewer
Duke Lemur Center Museum of Natural History
IP holder
Duke Lemur Center
Copyright statement
 Copyright Not Evaluated
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1552848 (to DM Boyer)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/449969
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object dpc:ost:30 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
Justin Gladman, Mackenzie Aguilar
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
160
Power
0.01408
Amperage
88
Surrounding material
Air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000030424: Flexed Hindlimb [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Justin Gladman, Mackenzie Aguilar
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000030424: Flexed Hindlimb [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000030424: Flexed Hindlimb [CTImageSeries] [Etc] was processed with 2 activities to create derived Media 000449969: Femur [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
doug boyer
Event date
July 12, 2022
Software
avizo
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
avizo
Description
used segmentation editor to extract right femur

Processing Activity 2: Smoothing/Noise Reduction

Software
avizo
Description
cleaned up segmented femur

Media produced by this event on MorphoSource

Media 000449969: Femur [Mesh] [CT] (this media)