Media 000478200: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
LACM:Fish:32534.003 Bollmannia umbrosa
Managed by
Bill Ludt

Login or create an account to download files

Media Display

No file uploaded.

Related Media (0)

Media produced from the same original imaging that created Media 000478200 (this media). Includes all media associated with this media through an imaging and processing workflow.

No related media found.

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000478200
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
LACM:Fish:32534.003
Object taxonomy
Bollmannia umbrosa
Object organization
LACM Ichthyology
Side
--
Orientation
--
Short description
--
Full description
LACM 32534-3 Gobiidae Bollmania umbrosa
Creator
W.B. Ludt; M. Wilson
Date created
March 11, 2021
Date uploaded
October 27, 2022

FILE OBJECT DETAILS Field Definitions

File name
--
File format(s)
--
File size
--
Image width
--
Image height
--
Color space
--
Color depth
--
Compression
--
X pixel spacing
0.010000
Y pixel spacing
0.010000
Z pixel spacing
0.010000
Pixel spacing units
Mm
Slice thickness
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1276, Cornell University Biotechnology Resource Center (Cornell University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Bill Ludt
Data uploaded by
Bill Ludt
Publication status
Open Download
Download reviewer
Todd Clardy; Bill Ludt
IP holder
Natural History Museum of Los Angeles County
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-2001443 (“CryptoVert”)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/478200
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object LACM:Fish:32534.003 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Cornell University Biotechnology Resource Center (Cornell University)
Creator
Teresa Porri
Event date
November 09, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
690ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
70kV
Power
--
Amperage
200uA
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 2 activities to create derived Media 000478200: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
W.B. Ludt, M. Wilson
Event date
March 11, 2021
Software
Slicer; Fiji
Description
--
Description attachment
None

Processing Activity 1: Bit Depth Change

Software
Fiji
Description
Converted images from 16bit to 8bit

Processing Activity 2: Crop

Software
Slicer
Description
Cropped images to single individual specimen

Media produced by this event on MorphoSource

Media 000478200: Whole Body [CTImageSeries] [CT] (this media)