Media 000496978: Mandible
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Mamm:MVZ:Mamm:138479 Echymipera kalubu
Managed by
Carol Spencer

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Related Media (4)

Media produced from the same original imaging that created Media 000496978 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000496978 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

Other Related Media (3)

Other media associated with the original imaging that produced Media 000496978 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Mesh
· Restricted Download
Mesh
· Restricted Download
Mesh
· Restricted Download

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000496978
Media type
Mesh
Object element or part
mandible
Object represented
MVZ:Mamm:MVZ:Mamm:138479
Object taxonomy
Echymipera kalubu
Object organization
Museum of Vertebrate Zoology (MVZ) Mammal Collection (Arctos)
Side
NotApplicable
Orientation
--
Short description
mandible of Echymipera kalubu
Full description
--
Creator
Mein, Erin
Date created
October 10, 2022
Date uploaded
February 15, 2023

FILE OBJECT DETAILS Field Definitions

File name
Echymipera_kalubu_mandible_MVZ-M138479.ply
File format(s)
PLY
File size
20.6 MB
Points
488189
Polygons
371066
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
22.711, 46.903, 18.030
Centroid coordinates
39.620, 119.911, 77.620
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Derived directly from
Media 000085264: Whole Body [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Erin Mein
Publication status
Restricted Download
Download reviewer
Carla Cicero; Chris Conroy; Museum of Vertebrate Zoology; Carol Spencer
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
ARC Centre of Excellence for Australian Biodiversity and Heritage
Publisher
Ozboneviz
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/496978
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Mamm:MVZ:Mamm:138479 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)
Creator
Ramon Nagesan, Gregory Pandelis, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
250
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1601
Voltage
85
Power
0.017
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000085264: Whole Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Ramon Nagesan, Gregory Pandelis, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000085264: Whole Body [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000085264: Whole Body [CTImageSeries] [Etc] was processed with 2 activities to create derived Media 000496978: Mandible [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Mein, Erin
Event date
October 10, 2022
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Materialise Mimics
Description
Segmentation with Mimics

Processing Activity 2: Smoothing/Noise Reduction

Software
Geomagic Wrap
Description
removal of spikes with Meshdoctor

Media produced by this event on MorphoSource

Media 000496978: Mandible [Mesh] [CT] (this media)