Media 000537893: Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
CAS:HERP:12161 Phyllodactylus galapagensis
Managed by
Lauren Scheinberg

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Media produced from the same original imaging that created Media 000537893 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000537893
Media type
Volumetric Image Series
Object element or part
body
Object represented
CAS:HERP:12161
Object taxonomy
Phyllodactylus galapagensis
Object organization
CAS Herpetology (HERP)
Side
NotApplicable
Orientation
--
Short description
microCT volume and derivatives
Full description
Record created by batch submission.
Creator
Edward Stanley
Date created
--
Date uploaded
July 07, 2023

FILE OBJECT DETAILS Field Definitions

File name
CAS-herp-12161-body.zip
File format(s)
ZIP archive, TIFF
File size
200 MB
Image width
947
Image height
331
Color space
BlackIsZero
Color depth
16
Compression
PackBits
Series type
Reconstructed image stack
X pixel spacing
0.030967
Y pixel spacing
0.030967
Z pixel spacing
0.030967
Pixel spacing units
Mm
Slice thickness
0.03096687
Number of images in set
1,858

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Lauren Scheinberg
Data uploaded by
Edward Stanley
Publication status
Restricted Download
Download reviewer
Lauren Scheinberg
IP holder
California Academy of Sciences
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC-SA Attribution-NonCommercial-ShareAlike 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-2001435; NSF DBI-1701714
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/537893
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object CAS:HERP:12161 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
200.098
Flux normalization
no
Pixel spacing calibration
--
Shading correction
no
Frame averaging
3
Projections
1200
Voltage
80
Power
0.0144
Amperage
180
Surrounding material
air
X-ray tube type
--
Target type
Reflection
Detector type
Scintillator (Phosphor used)
Detector pixels X
2024
Detector pixels size X
0.2
Detector pixels Y
2024
Detector pixels size Y
0.2
Detector configuration
Area (single or tiled detector)
Source object distance
124.2971875
Source detector distance
802.77534791
Target material
tungston
Rotation number
--
Phase contrast
no
Optical magnification
no
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000537893: Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Edward Stanley
Event date
--
Software
DatosX|R
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000537893: Body [CTImageSeries] [CT] (this media)