Media 000548713: Tiff Stack
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000548713: Tiff Stack
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
Project
· Public
Team
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000548713
Media type
Volumetric Image Series
Object element or part
Tiff stack
Object represented
Object taxonomy
Procolophonidae indet.
Object organization
Side
Unknown
Orientation
--
Short description
Tiff stack of partial maxilla
Full description
Tiff stack of partial maxilla bearing two teeth.
Creator
Brett Clark; Marc Jones
Date created
August 03, 2023
Date uploaded
August 14, 2023
FILE OBJECT DETAILS Field Definitions
File name
Tiffs_C.zip
File format(s)
ZIP archive, TIFF
File size
726 MB
Image width
739
Image height
586
Color space
BlackIsZero
Color depth
16
Compression
LZW
X pixel spacing
0.004092
Y pixel spacing
0.004092
Z pixel spacing
0.004092
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
841
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), NHMUK Imaging and Analysis Centre (The Natural History Museum, London)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
The Trustees of the Natural History Museum, London
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
nhmuk:pal:R38804
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
NHMUK Imaging and Analysis Centre (The Natural History Museum, London)
Creator
--
Event date
--
Software
--
Description
Acquisition Parameters:
scan_name: MJ_NHMUK_R38804_procolophonid_partMaxilla_
date:31/07/2023
time:22:40:07
camera_binning: 2
proj_width (pixels): 1010
proj_height (pixels): 1010
proj_data_type: uint16
source_filter: LE3
voltage (kV): 120.0
current (uA): 83.33333333333333
power (W): 10.0
pixel_size (mm): 0.004092156887054443
optical_magnigication: 4.0229997634887695
exposure_time (sec): 3.0
frame_per_images: 1
number_of_projections: 2401
Source-RA_distance: -25.0048828125
Detector-RA_distance: 16.004791259765625
number of scans on vertical axis: 1
Stitch scan: no
Wide scan: no
Description attachment
None
Reference attachment
None
Exposure time
3.0
Flux normalization
--
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2401
Voltage
120.0
Power
10.0
Amperage
83.33333333333333
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
Scintillator (Phosphor used)
Detector pixels X
1010
Detector pixels size X
0.004092156887054443
Detector pixels Y
1010
Detector pixels size Y
0.004092156887054443
Detector configuration
--
Source object distance
-25.0048828125
Source detector distance
16.004791259765625
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
Sequenced
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000548713: Tiff Stack [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Brett Clark, Marc Jones
Event date
August 03, 2023
Software
--
Description
Reconstruction Parameters:
recon_binning: 1
number_of_slices: 996
slice_width (pixels): 990
slice_height (pixels): 1010
voxel_size (mm): 0.004092156887054443
global_min: -0.06936904788017273
global_max: 0.5642217397689819
center_shift: -0.7766022086143494
Beam_hardening_const: 0.05000000074505806
Description attachment
None
Media produced by this event on MorphoSource
Media 000548713: Tiff Stack [CTImageSeries] [CT] (this media)