Media 000554611: Entire Specimen
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000554611: Entire Specimen
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
Team
· Public
Project
· Public
Project
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000554611
Media type
Volumetric Image Series
Object element or part
entire specimen
Object represented
Object taxonomy
Eleutherodactylus glandulifer
Object organization
Side
NotApplicable
Orientation
--
Short description
microCT volume and derivatives
Full description
Record created by batch submission.
Creator
Maria C Vallejo-Pareja
Date created
--
Date uploaded
September 04, 2023
FILE OBJECT DETAILS Field Definitions
File name
UF-Herp-58176.zip
File format(s)
ZIP archive, TIFF
File size
57.2 MB
Image width
1545
Image height
1373
Color space
BlackIsZero
Color depth
16
Compression
PackBits
Series type
Reconstructed image stack
X pixel spacing
0.027463
Y pixel spacing
0.027463
Z pixel spacing
0.027463
Pixel spacing units
Mm
Slice thickness
0.02746331
Number of images in set
3,068
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
Blackburn, D.C., et al. 2024. Increasing the impact of vertebrate scientific collections through 3D-imaging: the openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186. https://doi.org/10.1093/biosci/biad120
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
UF:Herp:58176
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Maria C Vallejo-Pareja
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
None
Exposure time
200.098
Flux normalization
no
Pixel spacing calibration
--
Shading correction
no
Frame averaging
3
Projections
2200
Voltage
80
Power
0.016
Amperage
200
Surrounding material
air
X-ray tube type
--
Target type
Reflection
Detector type
Scintillator (Phosphor used)
Detector pixels X
2024
Detector pixels size X
0.2
Detector pixels Y
2024
Detector pixels size Y
0.2
Detector configuration
Area (single or tiled detector)
Source object distance
110.486438
Source detector distance
804.6111534
Target material
tungston
Rotation number
--
Phase contrast
no
Optical magnification
no
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000554611: Entire Specimen [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Maria C Vallejo-Pareja
Event date
--
Software
DatosX|R
Description
--
Description attachment
None