Media 000558575: Femur
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000558575
Media type
Mesh
Object element or part
femur
Object represented
Object taxonomy
Pithecia pithecia
Side
Left
Orientation
--
Short description
segmented from CT scan of alcohol-preserved wet specimen
Full description
--
Creator
Doug Boyer
Date created
September 12, 2023
Date uploaded
September 13, 2023

FILE OBJECT DETAILS Field Definitions

File name
sbu-whitepin-pithecia_femur-fin.stl
File format(s)
STL
File size
51.9 MB
Points
544369
Polygons
1088734
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
119.841, 29.121, 68.608
Centroid coordinates
89.324, 59.740, 134.370
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Stony Brook University, Dept of Anatomical Sciences
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
BCS 1552848
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object sbu:White Pin was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
Mackenzie Shepard
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
140
Power
0.016800000000000002
Amperage
120
Surrounding material
Air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000055603: Full Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Mackenzie Shepard
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000055603: Full Body [CTImageSeries] [Etc] was processed with 2 activities to create derived Media 000558575: Femur [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Doug Boyer
Event date
September 12, 2023
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Dragonfly
Description

Processing Activity 2: Smoothing/Noise Reduction

Software
Geomagic Wrap
Description

Media produced by this event on MorphoSource

Media 000558575: Femur [Mesh] [CT] (this media)