Media 000568906: Whole Body
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000568906: Whole Body
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000568906
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
Object taxonomy
Trimma sp.
Object organization
Side
--
Orientation
--
Short description
--
Full description
LACM 32820-3 Gobiidae Trimma sp.
Creator
W.B. Ludt; M. Wilson
Date created
October 05, 2023
Date uploaded
October 05, 2023
FILE OBJECT DETAILS Field Definitions
File name
LACM_32820_3_Gobiidae_Trimma.zip
File format(s)
ZIP archive, TIFF
File size
340 MB
Image width
398
Image height
793
Color space
BlackIsZero
Color depth
8
Compression
Uncompressed
X pixel spacing
0.010000
Y pixel spacing
0.010000
Z pixel spacing
0.010000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,121
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1276, Cornell University Biotechnology Resource Center (Cornell University)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Natural History Museum of Los Angeles County
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-2001443 (“CryptoVert”)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
LACM:Fish:32820.003
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Cornell University Biotechnology Resource Center (Cornell University)
Creator
Teresa Porri
Event date
July 14, 2023
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
740ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
70kV
Power
--
Amperage
200uA
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 2 activities
to create
derived
Media 000568906: Whole Body [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
M. Wilson, W.B. Ludt
Event date
October 05, 2023
Software
Slicer; Fiji
Description
--
Description attachment
None
Processing Activity 1: Bit Depth Change
Software
Fiji
Description
Converted images from 16bit to 8bit
Processing Activity 2: Crop
Software
Slicer
Description
Cropped images to single individual specimen