Media 000600648: Forelimb
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000600648: Forelimb
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
Project
· Public
Project
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000600648
Media type
Mesh
Object element or part
Forelimb
Object represented
Object taxonomy
Varanus prasinus
Object organization
Side
Right
Orientation
--
Short description
Right forelimb with elements colored to demonstrate forelimb anatomy
Full description
Skeleton of the right forelimb of an emerald tree monitor, Varanus prasinus (specimen UF Herps 71411), a fluid preserved specimen at Florida Museum of Natural History, with elements colored to demonstrate forelimb anatomy. This scene was created by Jaimi Gray (oVert team) using pre-existing mesh files (see below) which were edited to separate, reposition, and color elements in Blender and Meshlab.
Segmentation and original mesh files by Karina Riddell with Volumegraphics VGStudioMax 3.3 from CT scan data. Models complemented a learning activity designed during the UF Center for Precollegiate Education and Training workshop “3D Vertebrates: From Museum Shelves to Classrooms.” Scanning and modeling of this specimen was funded by the oVert project at the University of Florida (NSF DBI 1701714, https://tinyurl.com/oVertwiki).
Creator
Jaimi Gray
Date created
January 30, 2024
Date uploaded
January 30, 2024
FILE OBJECT DETAILS Field Definitions
File name
monitor_forelimb_with_colors.ply
File format(s)
PLY
File size
8.06 MB
Points
166121
Polygons
342394
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
65.973, 63.335, 18.865
Centroid coordinates
3.586, -1.101, 1.754
Units of point coordinates
--
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(0 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
UF:Herp:71411
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Dan Paluh
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
0.333
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
1600
Voltage
150
Power
0.03
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000057677: 16bit Tiffs [CTImageSeries] [Etc].
Processing Details Field Definitions
Creator
Dan Paluh
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000057677: 16bit Tiffs [CTImageSeries] [Etc]
was processed
to create
derived
Media 000600648: Forelimb [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
Jaimi Gray
Event date
January 30, 2024
Software
VG Studio Max & Blender
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000600648: Forelimb [Mesh] [CT] (this media)