Media 000602402: Forelimb
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000602402
Media type
Mesh
Object element or part
Forelimb
Object represented
Object taxonomy
Lenothrix canus
Object organization
Side
Right
Orientation
--
Short description
Right forelimb with elements colored to demonstrate forelimb anatomy
Full description
Skeleton of the right forelimb of a gray tree rat, *Lenothrix canus* (specimen AMNH M240359), a fluid preserved specimen from the American Museum of Natural History, with elements colored to demonstrate forelimb anatomy. This scene was created by Jaimi Gray (oVert team). Forelimb bones segmented and mesh files generated from CT data (downloaded from Morphosource) using Avizo (version 2020.1). Meshes further edited, repositioned, and colored using Meshlab. American Museum of Natural History provided access to these data, the collection of which was funded by oVert TCN; NSF DBI-1701714; NSF DBI-1701713.
Creator
Jaimi Gray
Date created
February 06, 2024
Date uploaded
February 06, 2024

FILE OBJECT DETAILS Field Definitions

File name
tree_rat_forelimb.ply
File format(s)
PLY
File size
15 MB
Points
315630
Polygons
631088
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
8.163, 49.128, 24.367
Centroid coordinates
1.706, -6.808, -2.327
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-240359 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)
Creator
Ramon Nagesan, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
250
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1601
Voltage
85
Power
0.017
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000100502: Whole Body [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Ramon Nagesan, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000100502: Whole Body [CTImageSeries] [CT] was processed to create derived Media 000602402: Forelimb [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
February 06, 2024
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000602402: Forelimb [Mesh] [CT] (this media)