Media 000602419: Forelimb
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UWFC:ADULT COLLECTION:UW 018741 Oncorhynchus mykiss
Managed by
Jaimi Gray

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Media Display

Related Media (1)

Media produced from the same original imaging that created Media 000602419 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000602419 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Open Download

In Collections

Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000602419
Media type
Mesh
Object element or part
Forelimb
Object represented
UWFC:ADULT COLLECTION:UW 018741
Object taxonomy
Oncorhynchus mykiss
Object organization
UW Burke Museum of Natural History and Culture, Ichthyology Collection
Side
Right
Orientation
--
Short description
Right forelimb with elements colored to demonstrate forelimb anatomy
Full description
Skeleton and fin rays of the right pectoral fin of a rainbow trout, Oncorhynchus mykiss (specimen UW 018741), a fluid preserved specimen from the University of Washington Fish Collection, with elements colored to demonstrate forelimb anatomy. Scene created by Jaimi Gray (oVert team). Fin bones and rays segmented and mesh files generated from CT data (downloaded from Morphosource) using Avizo (version 2019.2). Meshes further edited and colored using Meshlab. University of Washington Fish Collection provided access to these data provided access to these data, the collection of which was funded by oVert TCN; NSF DBI-1701714; NSF DBI-1701665. tinyurl.com/oVertwiki
Creator
Jaimi Gray
Date created
February 06, 2024
Date uploaded
February 06, 2024

FILE OBJECT DETAILS Field Definitions

File name
trout_forelimb_with_color.ply
File format(s)
PLY
File size
3.72 MB
Points
77971
Polygons
155917
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
3.178, 10.263, 3.753
Centroid coordinates
0.159, -0.510, 0.940
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000072070: Body [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jaimi Gray
Data uploaded by
Jaimi Gray
Publication status
Open Download
Download reviewer
Jaimi Gray
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/602419
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://skfb.ly/6TKM9

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UWFC:ADULT COLLECTION:UW 018741 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Mackenzie Gerringer
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1.19
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
4
Projections
800
Voltage
65
Power
0.007995
Amperage
123
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000072070: Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Mackenzie Gerringer
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000072070: Body [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000072070: Body [CTImageSeries] [Etc] was processed to create derived Media 000602419: Forelimb [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
February 06, 2024
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000602419: Forelimb [Mesh] [CT] (this media)