Media 000607260: Skull
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000607260: Skull
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000607260
Media type
Volumetric Image Series
Object element or part
skull
Object represented
Object taxonomy
Urocitellus columbianus
Object organization
Side
--
Orientation
--
Short description
HRXCT scan of skull
Full description
University of Texas High-Resolution X-ray CT Facility Archive 0368
Swidersk:
columbia: Warp corrected scans and image processing of the skull of a female Spermophilus columbianus ruficaudus (UM 99308; Washington, Walla Walla Co., Touchet, collected by P. Clifton on 11 April, 1951) . Scanned for Don Swiderski of the University of Michigan, Museum of Zoology. Scanned by Matthew Colbert on 7/29/00. Image processing by Jessie Maisano. Original scans on Archive 0254. Warp corrections applied by Holly Nance, April 2001.
Original scan parameters. II, 120 kV, 0.2 mA, no filter, air wedge, 160% offset, slice thickness 3 lines (= 0.138 mm), S.O.D. 90 mm, 1200 views, 2 samples per view, interslice spacing 3 lines (=0.138 mm), field of reconstruction 39 mm (maximum field of view 40.09 mm), reconstruction offset 630, reconstruction scale 33. Scanned in three-slice mode.
warpcorr (16bit): The above images modified with IDL software “Unwarp v.1.0” written by Dr. Richard Ketcham to correct for radial distortion of images introduced by ACTIS scanning software. Corrected images are now 522 pixels by 522 pixels, resulting in a revised field of reconstruction of 39.762 mm.
Creator
Matthew Colbert
Date created
July 29, 2000
Date uploaded
February 26, 2024
FILE OBJECT DETAILS Field Definitions
File name
New_folder.zip
File format(s)
ZIP archive, TIFF
File size
81.7 MB
Image width
485
Image height
406
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.076000
Y pixel spacing
0.076000
Z pixel spacing
0.138000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
415
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
University of Michigan Museum of Zoology (Copyright and License)
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, IIS-9874781
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant IIS-9874781 to Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
ummz:mammals:99308
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
July 29, 2000
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000607260: Skull [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000607260: Skull [CTImageSeries] [CT] (this media)