Media 000607682: Whole Body
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000607682: Whole Body
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000607682
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
Object taxonomy
Bollmannia umbrosa
Object organization
Side
--
Orientation
--
Short description
--
Full description
LACM 32560-6 Gobiidae Bollmannia umbrosa soft tissues stained with iodine uploaded at half resolution
Creator
M. Wilson
Date created
February 28, 2024
Date uploaded
February 29, 2024
FILE OBJECT DETAILS Field Definitions
File name
LACM_32560_6_Gobiidae_Bollmannia_umbrosa.zip
File format(s)
ZIP archive, TIFF
File size
2.31 GB
Image width
981
Image height
769
Color space
BlackIsZero
Color depth
8
Compression
Uncompressed
X pixel spacing
0.200000
Y pixel spacing
0.200000
Z pixel spacing
0.200000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
4,699
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1276, Cornell University Biotechnology Resource Center (Cornell University)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Natural History Museum of Los Angeles County
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-2001443 (“CryptoVert”)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
LACM:Fish:32560.006
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Cornell University Biotechnology Resource Center (Cornell University)
Creator
Teresa Porri
Event date
June 09, 2022
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
830ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
100kV
Power
--
Amperage
200uA
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 2 activities
to create
derived
Media 000607682: Whole Body [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
M. Wilson
Event date
February 28, 2024
Software
Slicer; Fiji
Description
--
Description attachment
None
Processing Activity 1: Bit Depth Change
Software
Fiji
Description
Converted images from 16bit to 8bit
Processing Activity 2: Crop
Software
Slicer
Description
Cropped images to single individual specimen