Media 000615338: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ansp:fish:128688 Tetranematichthys wallacei
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000615338 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000615338
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
ansp:fish:128688
Object taxonomy
Tetranematichthys wallacei
Object organization
Academy of Natural Sciences of Drexel Ichthyology Collection
Side
--
Orientation
--
Short description
HRXCT scan - whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1688 Lundberg: tetra: Scans of the body of a preserved Tetranematichthys wallacei (ANSP 128688; S. America, Colombia, Meta, Cano El Viento; Finca El Viento S of Matazul; coll. J. E. Bohlke et al. 18 Mar 1973) for John Lundberg of the Academy of Natural Sciences, Department of Ichthyology. Specimen scanned by Matthew Colbert 15 May 2007. 16bit: 1024x1024 16-bit TIFF images. II, 190 kV, 0.15 mA, intensity control on, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.1155 mm), S.O.D. 166 mm, 1400 views, 3 samples per view, inter-slice spacing 2 lines (= 0.1155 mm), field of reconstruction 51 mm (maximum field of view 54.98722 mm), reconstruction offset 4000, scanner scale 6500. Acquired with 19 slices per rotation and 15 slices per set. Drift and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” with parameter “goodfile=475” and “RK_SinoRingProcSimul” with default parameters. Deleted the first four duplicate slices of each rotation, and the first 4 blank slices and blank slices 1-7. Total final slices = 1118.
Creator
Matthew Colbert
Date created
May 15, 2007
Date uploaded
March 26, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
1.22 GB
Image width
788
Image height
1020
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.049800
Y pixel spacing
0.049800
Z pixel spacing
0.115500
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,118

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Lauren Nguyen
Publication status
Restricted Download
Download reviewer
Kyle Luckenbill; Jessie Maisano
IP holder
Academy of Natural Sciences of Drexel University
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-0089612
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-0089612 to John Lundberg. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/615338
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://www.digimorph.org/specimens/Tetranematichthys_wallacei/male/whole/

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ansp:fish:128688 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
May 15, 2007
Software
--
Description
--
Description attachment
None
Reference attachment
None
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000615338: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000615338: Whole Body [CTImageSeries] [CT] (this media)