Media 000615382: Anterior Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000615382
Media type
Volumetric Image Series
Object element or part
anterior body
Object represented
Object taxonomy
Trogloglanis pattersoni
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1153 Hendrickson: Trogloglanis: Scans of whole ethanolic Trogloglanis pattersoni (TNHC 21701) for Dr. Dean Hendrickson of The University of Texas at Austin. Specimen scanned by Matthew Colbert 21 January 2005. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.04926 mm), S.O.D. 72 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.04926 mm), field of reconstruction 23 mm (maximum field of view 23.5716 mm), reconstruction offset 9000, reconstruction scale 2550. Acquired with 15 slices per rotation. Spike- and ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul.” Reconstruction angle -5 degrees. Rotation correction done by Susan Garlock using IDL routine “DoRotationCorrection.” Total slices = 735.
Creator
Matthew Colbert
Date created
January 21, 2005
Date uploaded
March 26, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
829 MB
Image width
918
Image height
802
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.022460
Y pixel spacing
0.022460
Z pixel spacing
0.049260
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
735

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Texas Natural History Collections
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by Dean Hendrickson. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object tnhc:herpetology:21701 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
January 21, 2005
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000615382: Anterior Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000615382: Anterior Body [CTImageSeries] [CT] (this media)