Media 000615515: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
uf:field#:49415 Carettochelys insculpta
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000615515 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000615515
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
uf:field#:49415
Object taxonomy
Carettochelys insculpta
Object organization
FLMNH Division of Herpetology
Side
--
Orientation
--
Short description
HRXCT scan - whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 0929 Rowe: Carettochelys: Scans of the head of Carettochelys insculpta (UF 49415; New Guinea, Indonesian half, was export point but probably from Fly River, Louis Porras) for Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin, and DigiMorph. Specimen scanned by Matthew Colbert 6 November 2003. 16bit: 1024x1024 16-bit TIFF format. P250D, 420 kV, 1.8 mA, one brass filter, empty container wedge, 190% offset, integration time 64 ms, slice thickness 0.5 mm, S.O.D. 698 mm, 1400 views, one ray averaged per view, one sample per view, interslice spacing 0.4 mm, field of reconstruction 268 mm (maximum field of view 280.1441), reconstruction offset 6100, reconstruction scale 3200. Ring-removal processing done by Rachel Racicot based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with parameter “BESTOF5”. Total slices = 204.
Creator
Matthew Colbert
Date created
November 06, 2003
Date uploaded
March 26, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
228 MB
Image width
777
Image height
1024
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.260000
Y pixel spacing
0.260000
Z pixel spacing
0.400000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
204

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS scanner with GE Titan X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Lauren Nguyen
Publication status
Open Download
Download reviewer
David Blackburn ; Digital Imaging Florida Museum; Jessie Maisano
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
 In Copyright
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, IIS-0208675
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant IIS-0208675 to Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
Agreement File

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/615515
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://www.digimorph.org/specimens/Carettochelys_insculpta/

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object uf:field#:49415 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
November 06, 2003
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
--
Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000615515: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000615515: Whole Body [CTImageSeries] [CT] (this media)