Media 000618226: Anterior Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ANSP:FISH:164978 Cranoglanis sp.
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000618226 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000618226
Media type
Volumetric Image Series
Object element or part
anterior body
Object represented
ANSP:FISH:164978
Object taxonomy
Cranoglanis sp.
Object organization
Academy of Natural Sciences of Drexel Ichthyology Collection
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1093 Lundberg Cranoglanis: Scans of a whole Cranoglanis (ANSP 164978, alcoholic) for Dr. John Lundberg of the Academy of Natural Sciences, Philadelphia, PA. Specimen scanned by Matthew Colbert 8 October 2004. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.0877 mm), S.O.D. 128 mm, 1600 views, 2 samples per view, inter-slice spacing 2 lines (= 0.0877 mm), field of reconstruction 40 mm (maximum field of view 41.90506 mm), reconstruction offset 5490, reconstruction scale 1500. Acquired with 15 slices per rotation. Drift- and ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed off-center with Y offset of 3.0, and rotation angle of -15.8 degrees. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Images flipped because specimen scanned bottom to top. Total slices = 645.
Creator
Matthew Colbert
Date created
October 08, 2004
Date uploaded
April 02, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bitrot.zip
File format(s)
ZIP archive, TIFF
File size
662 MB
Image width
813
Image height
836
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.039100
Y pixel spacing
0.039100
Z pixel spacing
0.087700
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
645

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Theresa De Cree
Publication status
Restricted Download
Download reviewer
Kyle Luckenbill; Jessie Maisano
IP holder
Academy of Natural Sciences of Drexel University
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-0089612
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-0089612 to John Lundberg. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/618226
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://digimorph.org/specimens/Cranoglanis_bouderius/

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ANSP:FISH:164978 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
October 08, 2004
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
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Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
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Voltage
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Power
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Amperage
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Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000618226: Anterior Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000618226: Anterior Body [CTImageSeries] [CT] (this media)