Media 000618695: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000618695
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Nicrophorus americanus
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1231 Rowe: Nicrophorus: Scans of the whole body of Nicrophorus americanus for Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin. Specimen scanned by Matthew Colbert 6 May 2005. 16bit: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, air wedge, no offset, slice thickness 1 line (= 0.04983 mm), S.O.D. 146 mm, 1600 views, 3 samples per view, inter-slice spacing 1 line (= 0.04983 mm), field of reconstruction 47 mm (maximum field of view 47.84473 mm), reconstruction offset 7000, scanner scale 1200000, reconstruction scale 4000. Acquired with 27 slices per rotation, with increment set for 25 slices, so first 2 slices in each set after the first were deleted. Ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routine SinoRingProcSimul,” with default parameters. Reconstructed with default parameters. Total final slices = 252.
Creator
Matthew Colbert
Date created
May 06, 2005
Date uploaded
April 04, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
320 MB
Image width
914
Image height
946
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.045900
Y pixel spacing
0.045900
Z pixel spacing
0.049830
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
253

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
University of Connecticut Biological Collections
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, IIS-0208675
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant IIS-0208675 to Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object none:none was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
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Description Attachment
None
Photographic Reference
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
--
Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000618695: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000618695: Whole Body [CTImageSeries] [CT] (this media)