Media 000629988: Melopsittacus Undulatus Stained Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
SU:Gold:_2021_SZ_06 Melopsittacus undulatus
Managed by
M. Eugenia Gold

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Media produced from the same original imaging that created Media 000629988 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000629988
Media type
Volumetric Image Series
Object element or part
Melopsittacus undulatus stained head
Object represented
SU:Gold:_2021_SZ_06
Object taxonomy
Melopsittacus undulatus
Object organization
Suffolk University Biology Department
Side
--
Orientation
--
Short description
Melopsittacus undulatus diceCT scan of whole head
Full description
--
Creator
--
Date created
--
Date uploaded
May 20, 2024

FILE OBJECT DETAILS Field Definitions

File name
Gold_2021_SZ_Stained Images and Info.zip
File format(s)
ZIP archive, TIFF
File size
4.62 GB
Image width
1422
Image height
1611
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.015676
Y pixel spacing
0.015676
Z pixel spacing
0.015676
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,629

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (1 step)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 620 Versa x-ray microscope (xrm), Center for Nanoscale Systems (Harvard University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
M. Eugenia Gold
Data uploaded by
M. Eugenia Gold
Publication status
Restricted Download
Download reviewer
M. Eugenia Gold
IP holder
--
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/629988
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object SU:Gold:_2021_SZ_06 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Center for Nanoscale Systems (Harvard University)
Creator
--
Event date
--
Software
--
Description
Diffusible iodine contrast-enhanced CT scan of Melopsittacus undulatus head
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
95
Power
100
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 1 activity to create derived Media 000629988: Melopsittacus Undulatus Stained Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Crop

Software
ImageJ/Fiji
Description
Cropped to delete black space around the specimen.

Media produced by this event on MorphoSource

Media 000629988: Melopsittacus Undulatus Stained Head [CTImageSeries] [CT] (this media)