Media 000633459: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000633459
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Leuconotopicus albolarvatus
Object organization
Side
--
Orientation
--
Short description
HRXCT scan -- whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1947 Shunk: palbo: Scans and image processing of the body of a fresh Picoides albolarvatus (no locality info) for Stephen Shunk of Paradise Birding. Specimen scanned by Matthew Colbert 6 October 2008. Image processing by Jessie Maisano. 16bitrot: 1024x1024 16-bit TIFF images. II, 200 kV, 0.14 mA, intensity control off, high-power mode, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.1424 mm), S.O.D. 204 mm, 1400 views, 2 samples per view, inter-slice spacing 2 lines (= 0.1424 mm), field of reconstruction 66 mm (maximum field of view 67.86293 mm), reconstruction offset 3700, reconstruction scale 3700. Acquired with 19 slices per rotation and 15 slices per set. Ring- and flash-removal processing done by Jessie Maisano based on correction of raw sinogram data using IDL routines “RK_SinoRingProcSimul” and “RK_SinoDeSpike,” both with default parameters. Deleted last four slices of each rotation. Rotation correction processing done by Jessie Maisano using IDL routine “DoRotationCorrection.” Total slices = 810.
Creator
Matthew Colbert
Date created
October 06, 2008
Date uploaded
May 31, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
970 MB
Image width
843
Image height
1018
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.064500
Y pixel spacing
0.064500
Z pixel spacing
0.142400
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
810

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object none:none was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
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Description
--
Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000633459: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000633459: Whole Body [CTImageSeries] [CT] (this media)