Media 000636659: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
usnm:Amphibians & Reptiles:344819 Ungaliophis continentalis
Managed by
Collection Manager

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Media produced from the same original imaging that created Media 000636659 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000636659
Media type
Volumetric Image Series
Object element or part
Whole Body
Object represented
usnm:Amphibians & Reptiles:344819
Object taxonomy
Ungaliophis continentalis
Object organization
NMNH - Division of Amphibians and Reptiles
Side
--
Orientation
--
Short description
HRXCT scan -- whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2430 Smith: ucont: Scans of the whole body of Ungaliophis continentalis (USNM 344819; Parque Nacional Pico Bonito, Quebrada de Oro (tributary of Río Viejo), Atlántida, Honduras; Collected on 1995-02-13) for Krister Smith of the Museum und Forschungsinstitut Senckenberg. Specimen scanned by Matthew Colbert 14 April 2011. 16bit: 1024x1024 16-bit TIFF images. II, 180 kV, 0.25 mA, intensity control off, high-power mode, no filter, empty container wedge, no offset, slice thickness 1 line ( = 0.07284 mm), S.O.D. 209 mm, 1800 views, 3 samples per view, inter-slice spacing 1 line ( = 0.07284 mm), field of reconstruction 67 mm (maximum field of view 69.52635 mm), reconstruction offset 3500, reconstruction scale 8000. Acquired with 31 slices per rotation and 25 slices per set. Ring-removal processing done by Satomi Ishihama based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with parameter “bestof5=11.” Deleted fist 6 duplicate slices from each rotation. Deleted last 14 blank slices. Total final slices = 436.
Creator
Matthew Colbert
Date created
April 14, 2011
Date uploaded
June 12, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
605 MB
Image width
990
Image height
994
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.065430
Y pixel spacing
0.065430
Z pixel spacing
0.072840
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
436

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
0 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Collection Manager
Data uploaded by
Lauren Nguyen
Publication status
Restricted Download
Download reviewer
Collection Manager; Jessie Maisano
IP holder
Smithsonian Institution, National Museum of Natural History
Copyright statement
 Copyright Undetermined
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for Krister Smith. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/636659
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object usnm:Amphibians & Reptiles:344819 was imaged to create this media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
April 14, 2011
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
--
Pixel spacing calibration
--
Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

Media produced by this event on MorphoSource

Media 000636659: Whole Body [CTImageSeries] [CT] (this media)