Media 000638371: Stained Foetus
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
mvz:mammal specimens:125084 Balaenoptera borealis
Managed by
Carol Spencer

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Media produced from the same original imaging that created Media 000638371 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000638371
Media type
Volumetric Image Series
Object element or part
stained foetus
Object represented
mvz:mammal specimens:125084
Object taxonomy
Balaenoptera borealis
Object organization
Museum of Vertebrate Zoology (MVZ) Mammal Collection (Arctos)
Side
--
Orientation
--
Short description
HRXCT scan of stained foetus
Full description
University of Texas High-Resolution X-ray CT Facility Archive Lanzetti: Sei-whale: Re-scan of an iodine stained foetus of a Sei whale (Balaenoptera borealis; MVZ 125084) for Agnese Lanzetti of the University of California - Riverside. Specimen scanned by Matthew Colbert on 19 May 2016. 16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 150 kV, 0.14 mA, aluminum filter, Perkin Elmer detector, 0.25 pF gain, 1 fps, 2x2 binning, no flip, source to object 660.0 mm, source to detector 1316.772 mm, continuous CT scan, 2 frames averaged, 0 skip frames, 1800 projections, 7 gain calibrations, 15 mm calibration phantom, data range [-1.0, 7.5] (grayscales adjusted from NSI defaults), beam-hardening correction = 0.3. Voxel size = 257.9 μm. Total slices = 898.
Creator
Matthew Colbert
Date created
May 19, 2016
Date uploaded
June 20, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bitTIFF.zip
File format(s)
ZIP archive, TIFF
File size
803 MB
Image width
564
Image height
926
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
257.900000
Y pixel spacing
257.900000
Z pixel spacing
257.900000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
898

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Zachariah Saiz
Publication status
Restricted Download
Download reviewer
Chris Conroy; Carla Cicero; Carol Spencer; Museum of Vertebrate Zoology; Jessica Maisano
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for Agnese Lanzetti. oUTCT provided access to these data, funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/638371
MorphoSource DOI
Not assigned
External identifier
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External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:mammal specimens:125084 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
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Event date
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Description
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Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Target type
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Detector type
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000638371: Stained Foetus [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000638371: Stained Foetus [CTImageSeries] [CT] (this media)